Molecular Ecology Group · University of Primorska

Our Team

Meet the researchers, assistants, and administrators that make up the Molecular Ecology Group at UP FAMNIT.

Group Leader

Elena Bužan
Group Leader Professor

prof. dr. Elena Bužan

elena.buzan@upr.si

Elena Bužan is a molecular ecologist who graduated from the Biotechnical Faculty, University of Ljubljana, Slovenia, in collaboration with the University of Hull, UK. She has more than 15 years of experience in genetic and genomic data analysis. Her work involves the application of molecular genetic and genomic techniques to a variety of conservation and evolutionary problems, both basic and applied. She has a strong interdisciplinary background and broad research interests, including previous experience in linking disease occurrence to wildlife distribution and applying landscape genetic approaches—such as gene evolution and immunology. She applies evolutionary genetics to biogeography and conservation biology, focusing on the effects of habitat fragmentation and degradation on the genetic population structure of small mammals, ungulates, and selected model invertebrate species. She is particularly interested in fundamental questions about evolution, including the significance of species concepts and hybridization studies. She has served as the project leader for numerous international, national, and bilateral projects and has coordinated the study programmes Conservation Biology and Nature Conservation. She led international H2020 projects in bioscience research and coordinated the H2020 project STEP CHANGE (Science Transformation in Europe through Citizens’ involvement in Health, Conservation, and Energy Research), which linked several pilot studies in Citizen Science Research across Europe and Uganda, including those focused on the role of citizens in wildlife conservation. She coordinated the national consortium ERGA.SI in Slovenia, connecting eight institutions working in the fields of molecular ecology and conservation, and was later elected as a Partnership Officer in the European Reference Genome Atlas Consortium. In her second mandate, she is actively involved in the Expert Group for Open Science at the European University Association. She is also the university representative for LifeWatch and Slovenian National Supercomputing Network (SLING). She is a member of the Expert Council for Animal Protection at the Ministry of Agriculture, Forestry and Food of the Republic of Slovenia. Additionally, she holds a professorship at the University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies.

Researchers & Assistants

Žiga Velkavrh
PhD Assistant
dr. Žiga Velkavrh
ziga.velkavrh@upr.si
Short CV

Game theory, citizen science, statistical analyses of ecological metadata. Member of STEP CHANGE, PRO-COAST and BIG PICTURE projects. Co-developer of the SRNA citizen science app.

Žiga obtained a doctoral degree in Mathematical Sciences at UP FAMNIT, focusing on indirect reciprocity and behavioral strategy elicitation. He collaborated with the Fisheries Research Institute of Slovenia on lamprey data analysis.

Konstantinos Papakostas
PhD Assistant
dr. Konstantinos Papakostas
konstantinos.papakostas@upr.si
Short CV

Mammal ecology and conservation with a focus on ungulates. Uses ecological modelling to study spatial ecology, behaviour, and conservation of chamois under climatic and anthropogenic pressures. Collaborates on ungulate research across Croatia, Slovenia, Spain, and Italy.

Konstantinos earned his PhD at the University of Ioannina (Greece) on the ecology and conservation of the Balkan chamois, and holds an MSc in Crop Science from the Agricultural University of Athens. He has contributed to monitoring and conservation work in Greek protected areas and to citizen science for the Balkan chamois.

Urška Gerič
PhD Student
Urška Gerič
urska.geric@upr.si
Short CV

PhD in Computer Science. Hybridization between wild and domestic species. Machine learning for genetic marker identification and bioinformatic pipeline development.

Urška completed degrees in Bioinformatics and Nature Conservation and is pursuing Data Science. Involved in the P1-0386 Conservation biology research programme, teaching bioinformatics and genetics at UP FAMNIT.

Aja Bončina
PhD Student
Aja Bončina
aja.boncinca@upr.si
Short CV

PhD in Conservation Biology. eDNA analysis for wild ungulate ecology. Part of the BGE project. Integrates genetic, behavioural, and spatial data for population genetic dynamics.

Aja holds a bachelor’s and master’s in Conservation Biology from UP FAMNIT. She teaches conservation biology, bioinformatics and genetics and is part of the Biodiversity Genomics Europe (BGE) project.

Alenka Babič
Assistant
Alenka Babič
alenka.babic@upr.si
Short CV

Assistant professor in organic chemistry and biochemistry. Focuses on tick ecology and mammal diet analysis. Involved in BGE and BEPREP projects.

Alenka holds a Master’s in Nature Conservation from UP FAMNIT. Her thesis and publications focused on tick ecology and infestation. She works in the lab analysing the diet of different mammals.

Marko Čorkalo
Assistant
Marko Čorkalo
marko.corkalo@upr.si
Short CV

Wildlife monitoring via camera traps and eDNA. BIG PICTURE and PRO-COAST. International research experience across Taiwan, Thailand, Saudi Arabia, Germany, Angola, and Peru.

Marko holds a master’s in environmental science from the University of Zagreb. He teaches organic chemistry and biochemistry and contributes statistical analyses in R and genetic analyses to the team.

Luka Duniš
Assistant
Luka Duniš
luka.dunis@upr.si
Short CV

Teaches bioinformatics and genetics. Camera trap fieldwork, hybridization and immunogenetics research. Key developer of the SRNA citizen science platform.

Luka holds a bachelor’s and master’s in Conservation Biology. He contributed to ungulate density estimation across Slovenia and was engaged in BIG PICTURE, PRO-COAST and STEP CHANGE.

Stefan Cidilko
Assistant
Stefan Cidilko
stefan.cidilko@upr.si
Short CV

WGS and metagenomics big data analysis. Previously at Seven Bridges Genomics developing CRISPR pipelines for Bristol Myers Squibb. Teaches Introduction to Bioinformatics.

Stefan holds a master’s in molecular biology from the University of Belgrade. His work focuses on extracting biologically meaningful insights from large-scale WGS and metagenomic datasets.

Urška Pobega
Assistant
Urška Pobega
urska.pobega@upr.si
Short CV

Laboratory molecular analyses and whole-genome sequencing. Research on alpine ibex inbreeding in Slovenia and common rock partridge genetics in the Balkans.

Urška holds a master’s in Nature Conservation from UP FAMNIT. Experienced in a range of laboratory techniques and genetic analyses, with a particular focus on whole-genome sequencing.

Nikola Pischiutta
Assistant
Nikola Pischiutta
nikola.pischiutta@upr.si
Short CV

Research and teaching assistant. Teaches practical organic chemistry and biochemistry. Establishing an Oxford Nanopore sequencing workflow. Population genetics of chamois (Rupicapra rupicapra). Curates the group’s sample database and manages its social media.

Nikola holds a master’s in molecular biology from the University of Zagreb. Before joining UP FAMNIT he worked on DNA barcoding and phylogenetic studies of aquatic insects and cave spiders, faunistic spider projects, and speleological field research.

Administration

Lea Vake
Administrator
Lea Vake
lea.vake@upr.si
Short CV

Project administrator and coordinator. Horizon Programme management, financial planning, and project applications. Supports PI Prof. Elena Bužan and the research group.

Lea holds a master’s in ethnology and cultural anthropology from the University of Ljubljana, and later specialized in tourism and rural development project coordination. She has worked in R&I for 3 years, mainly on the Horizon Programme.

Sonja Jantar
Project Manager
dr. Sonja Jantar
sonja.jantar@upr.si
Short CV

Project manager responsible for the financial management of large-scale international research projects. Expertise spanning research, project management, and the financial and administrative implementation of EU-funded projects.

Sonja holds a PhD in Molecular Biology and Biochemistry from the University of Zagreb. She has worked as a postdoctoral researcher, a project advisor at the Ruđer Bošković Institute, a special advisor to Croatia’s Minister of Science and Education, and a senior advisor and National Contact Point at the Agency for Mobility and EU Programmes (Horizon Europe).

Administrator
Tjaša Mermolja
Short CV

Works in the project office at the University of Primorska, providing support in project reporting, budgeting, financial planning, administration, and coordination of large-scale international and national research projects.

Tjaša completed her master’s studies in International Business at the School of Economics and Business, University of Ljubljana.

The Molecular Ecology Group brings together researchers, PhD students, assistants, and administrators with diverse expertise in molecular ecology, bioinformatics, field ecology, and conservation biology.
1 Group Leader
10 Researchers
3 Administrators